dose anyone have any of those?
It appears that some of those are old ROMs that have been renamed. When a better dump of a game becomes available, MAMEDev sometimes renames existing ROMs with new names and gives the new ROM the existing name. When this happens, clrmamepro will move the old ROM into it's backup folder and report it missing. For an explanation on why clrmampro does this, you better ask over at the clrmamepro forums.
Also josvolly\aa008.bin is not missing, there is another ROM in josvolly (aa003.bin) that is identical. But because aa008.bin is marked as a baddump, clrmampro won't copy it over automatically. You will probably have to manually insert aa008.bin into josvolly.zip. Once clrmamepro finds it in there, it won't remove it.
Please check your backup folder, see if you can rebuild some of your missings from it, and post a revised fixdat.